GHGA - The German Human Genome-Phenome Archive

All

94 repositories

upload-orchestration-service
Public
Python
•
Apache License 2.0
•0•0•0•1•Updated Feb 11, 2026Feb 11, 2026
metldata
Public
A framework for handling metadata based on ETL, CQRS, and event sourcing.
Python
•
Apache License 2.0
•0•2•0•0•Updated Feb 11, 2026Feb 11, 2026
schemapack
Public
Make your JSON Schemas sociable and create linked data model.
Python
•
Apache License 2.0
•0•2•3•1•Updated Feb 10, 2026Feb 10, 2026
charts
Public
Go Template
•0•0•0•1•Updated Feb 10, 2026Feb 10, 2026
data-portal
Public
GHGA Data Portal v2
TypeScript
•
Other
•0•0•0•0•Updated Feb 10, 2026Feb 10, 2026
nf-platypusindelcalling
Public
This page is reserved for NextFlow based Indell Calling Workflow (with Platypus) from DKFZ
workflow pipeline annotation nextflow somatic-variants annotations variant-calling somatic-mutations platypus nextflow-pipeline
Python
•
MIT License
•0•2•5•1•Updated Feb 10, 2026Feb 10, 2026
nf-snvcalling
Public
a Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF/SNVCallingWorkflow
somatic-variants somatic-mutations snv snv-annotation dkfz ghga snv-call odcf
Python
•
MIT License
•0•3•8•1•Updated Feb 10, 2026Feb 10, 2026
state-management-service
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Feb 10, 2026Feb 10, 2026
well-known-value-service
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Feb 9, 2026Feb 9, 2026
file-services-backend
Public
Python
•
Apache License 2.0
•0•0•0•2•Updated Feb 6, 2026Feb 6, 2026
dataset-information-service
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Feb 6, 2026Feb 6, 2026
reverse-transpiler-service
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Feb 6, 2026Feb 6, 2026
notification-service
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Feb 6, 2026Feb 6, 2026
mass
Public
A service for searching metadata artifacts and filtering results.
Python
•
Apache License 2.0
•0•0•0•0•Updated Feb 6, 2026Feb 6, 2026
notification-orchestration-service
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Feb 6, 2026Feb 6, 2026
dlq-service
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Feb 6, 2026Feb 6, 2026
work-package-service
Public
Service that handles work packages for the CLI client
Python
•
Apache License 2.0
•0•0•0•0•Updated Feb 4, 2026Feb 4, 2026
auth-service
Public
Authentication service for the GHGA data portal used by the API gateway via the ExtAuth protocol
Python
•
Apache License 2.0
•0•2•0•0•Updated Feb 4, 2026Feb 4, 2026
microservice-repository-template
Public template
A template for Python-based microservice repositories with continuous update delivery.
Python
•
Apache License 2.0
•2•1•0•0•Updated Feb 4, 2026Feb 4, 2026
access-request-service
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Feb 4, 2026Feb 4, 2026
hexkit
Public
A chassis library for building domain-focused, infrastructure-agnostic and event-driven microservices in Python.
Python
•
Apache License 2.0
•0•5•0•0•Updated Feb 4, 2026Feb 4, 2026
ghga-transpiler
Public
Python
•
Apache License 2.0
•0•0•0•1•Updated Feb 3, 2026Feb 3, 2026
ghga-service-commons
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Feb 3, 2026Feb 3, 2026
epic-docs
Public
Documentation and plans for service development milestones
Shell
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Apache License 2.0
•1•1•0•1•Updated Feb 3, 2026Feb 3, 2026
ghga-datasteward-kit
Public
GHGA-internal scripts to be used by data stewards.
Python
•
Apache License 2.0
•0•4•0•0•Updated Feb 2, 2026Feb 2, 2026
em-transformation-service
Public
Python
•
Apache License 2.0
•0•0•0•1•Updated Jan 30, 2026Jan 30, 2026
datahub-file-service
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Jan 29, 2026Jan 29, 2026
docs.ghga.de
Public
GHGA User Documentation
Python
•
Apache License 2.0
•1•1•1•4•Updated Jan 22, 2026Jan 22, 2026
ghga-connector
Public
CLI - Client to perform up- and download operations to and from a local ghga instance
Python
•
Apache License 2.0
•0•0•0•0•Updated Jan 22, 2026Jan 22, 2026
nf-cnvkitcalling
Public
R
•
MIT License
•0•1•1•0•Updated Jan 14, 2026Jan 14, 2026