High Performance Computing in Biology
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- University of Illinois at Urbana-Champaign
- http://www.hpcbio.illinois.edu
Popular repositories Loading
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16S-rDNA-dada2-pipeline
16S-rDNA-dada2-pipeline Public archive**DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version
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eib-marker-design
eib-marker-design PublicWorkflow for designing KASP markers from resequencing data
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EMIRGE
EMIRGE PublicForked from csmiller/EMIRGE
EMIRGE reconstructs full length ribosomal genes from short read sequencing data.
Python 2
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R-genomics
R-genomics PublicForked from datacarpentry/R-genomics
Lesson on data analysis and visualization in R for genomics
HTML 2
Repositories
- workflows-nextflow Public Forked from carpentries-incubator/workflows-nextflow
Workflow management with Nextflow and nf-core
HPCBio/workflows-nextflow’s past year of commit activity - configs Public Forked from nf-core/configs
Config files used to define parameters specific to compute environments at different Institutions
HPCBio/configs’s past year of commit activity - hpcbio-swc-bioc-intro Public
HPCBio/hpcbio-swc-bioc-intro’s past year of commit activity - eASV-pipeline-for-515Y-926R Public Forked from jcmcnch/eASV-pipeline-for-515Y-926R
This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
HPCBio/eASV-pipeline-for-515Y-926R’s past year of commit activity - snakemake-profiles Public
HPCBio/snakemake-profiles’s past year of commit activity - BRAKER Public Forked from Gaius-Augustus/BRAKER
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
HPCBio/BRAKER’s past year of commit activity
